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Treangen Lab

Treangen Lab @ Rice University

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  1. emu emu Public

    Python 74 11

  2. methphaser methphaser Public

    MethPhaser: methylation-based haplotype phasing of human genomes

    Python 50 4

  3. Olivar Olivar Public

    Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens

    Python 33 3

  4. lemur lemur Public

    Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

    Python 25 1

  5. bronko bronko Public

    Ultra-rapid detection of viral variants directly from sequencing data

    Rust 23

  6. radmicrobes radmicrobes Public

    2025 RAD microbes boot camp

    HTML 14 3

Repositories

Showing 10 of 20 repositories
  • emu Public
    treangenlab/emu’s past year of commit activity
    Python 74 MIT 11 13 3 Updated Dec 4, 2025
  • Strainify Public

    Abundance analysis tool for short-read metagenomics

    treangenlab/Strainify’s past year of commit activity
    Python 10 MIT 0 0 0 Updated Dec 2, 2025
  • Seqwin Public

    Ultrafast identification of signature sequences in microbial genomes

    treangenlab/Seqwin’s past year of commit activity
    Python 11 GPL-3.0 0 2 0 Updated Dec 1, 2025
  • magnet Public
    treangenlab/magnet’s past year of commit activity
    Jupyter Notebook 10 GPL-3.0 0 4 0 Updated Nov 24, 2025
  • bronko-test Public

    Analyses and supporting scripts for bronko manuscript

    treangenlab/bronko-test’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 20, 2025
  • Olivar Public

    Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens

    treangenlab/Olivar’s past year of commit activity
    Python 33 GPL-3.0 3 8 0 Updated Nov 15, 2025
  • bronko Public

    Ultra-rapid detection of viral variants directly from sequencing data

    treangenlab/bronko’s past year of commit activity
    Rust 23 MIT 0 0 0 Updated Nov 11, 2025
  • rhea Public

    Recognizing HGT Events in Assemblies

    treangenlab/rhea’s past year of commit activity
    Python 9 MIT 0 1 0 Updated Sep 29, 2025
  • treangenlab.github.io Public

    Treangen lab website

    treangenlab/treangenlab.github.io’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Aug 19, 2025
  • lemur Public

    Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

    treangenlab/lemur’s past year of commit activity
    Python 25 MIT 1 4 0 Updated Jul 23, 2025
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