v0.8.7

ClimaOcean v0.8.7

Diff since v0.8.6

Merged pull requests:

• Better names for default constants (#660) (@navidcy)
• Add ClimaOceanCopernicusMarineExt (#661) (@navidcy)

v0.8.6

ClimaOcean v0.8.6

Diff since v0.8.5

Merged pull requests:

• Read ECCO-Darwin field from NASA Earthdata for initial conditions and restoring (#328) (@seamanticscience)
• Use AdvectiveFormulation for the skew fluxes (#628) (@simone-silvestri)
• CompatHelper: add new compat entry for MeshArrays at version 0.3, (keep existing compat) (#630) (@github-actions[bot])
• CompatHelper: add new compat entry for Glob at version 1, (keep existing compat) (#632) (@github-actions[bot])
• Remove SurfaceFluxes.jl dependency (#635) (@simone-silvestri)
• Drop ECCODarwin tests (#637) (@simone-silvestri)
• Changes ExponentialCoordinate to ExponentialDiscretization (#638) (@taimoorsohail)
• Remove SurfaceFluxes dependency from Project.toml (#648) (@navidcy)
• Allow passing a COPERNICUS_USERNAME and COPERNICUS_PASSWORD as enviroment variables (#649) (@simone-silvestri)
• update PrescribedAtmosphere state to load correct time indices into memory (#651) (@xkykai)
• Replace q_vap_saturation_from_density with q_vap_from_p_vap (#653) (@szy21)
• Add possibility to change top BC for the sea_ice_simulation (#657) (@simone-silvestri)
• Get constants (e.g., g, R_Earth, Ω_Earth) from Oceananigans.defaults (#658) (@navidcy)
• tag v0.8.6 (#663) (@juliasloan25)

Closed issues:

• Workflow for downloading input forcing files without GPU node internet access (#344)
• Using MultiYearJRA55 with different start date as dataset causes out-of-bounds time indexing during interpolate_atmospheric_state! in OceanSeaIceModel (#646)
• Distributed MPI runs unable to save variables using jldsave (#647)
• Atlantic Ocean over one_degree_simulation (#650)
• DistributedFillHalo MethodError when running a distributed GPU ocean-sea-ice model (#655)

v0.8.5

ClimaOcean v0.8.5

Diff since v0.8.4

Merged pull requests:

• Ensure consistent download_dataset for Copernicus data (#522) (@simone-silvestri)
• Change the one-degree example top vertical resolution from ~50m to ~8m (#591) (@navidcy)
• Bump actions/checkout from 4 to 5 (#601) (@dependabot[bot])
• Use tmp directories for multi year JRA55 tests (#610) (@simone-silvestri)
• CompatHelper: bump compat for Oceananigans to 0.99, (keep existing compat) (#613) (@github-actions[bot])
• add colon2dash function to fix prefix (#617) (@xkykai)
• fix end date for glorys monthly (#621) (@xkykai)
• Add metadata_path import to Copernicus module (#623) (@xkykai)
• fix inpainted filepath for Copernicus (#625) (@xkykai)
• Restructure sea ice ocean fluxes (#627) (@simone-silvestri)

Closed issues:

• download_dataset for Copernicus doesn't work with Windows due to colon in filename (#616)
• FieldTimeSeries(::Metadata, ...) makes redundant downloads for multiple dates (#618)
• GLORYSMonthly's last_date is wrong (#620)
• missing using ClimaOcean.DataWrangling: metadata_path in Copernicus.jl (#622)
• inpainted_metadata_path for Copernicus does not include metadata.dir (#624)

v0.8.4

ClimaOcean v0.8.4

Diff since v0.8.3

Merged pull requests:

• Reinstate JRA55 multi year tests (#538) (@simone-silvestri)
• CompatHelper: bump compat for Oceananigans to 0.98, (keep existing compat) (#608) (@github-actions[bot])
• Update PrescribedAtmosphere default thermodynamics_parameters (#609) (@navidcy)

v0.8.3

ClimaOcean v0.8.3

Diff since v0.8.2

Merged pull requests:

• CompatHelper: bump compat for Thermodynamics to 0.14, (keep existing compat) (#603) (@github-actions[bot])
• Bump patch release v0.8.3 (#606) (@juliasloan25)

v0.8.2

ClimaOcean v0.8.2

Diff since v0.8.1

Merged pull requests:

• Use zstar in examples (#573) (@simone-silvestri)
• Change ECCO_PASSWORD to ECCO_WEBDAV_PASSWORD (#586) (@navidcy)
• Expose update_state!(atmos::PrescribedAtmosphere) (#590) (@navidcy)
• CompatHelper: bump compat for Reactant in [weakdeps] to 0.2, (keep existing compat) (#593) (@github-actions[bot])
• Expose include_rivers_and_icebergs kwarg instead of using the default (#594) (@navidcy)
• CompatHelper: bump compat for Thermodynamics to 0.13, (keep existing compat) (#596) (@github-actions[bot])
• Using the new Oceananigans (#597) (@simone-silvestri)
• Remove vertical_coordinate kwarg from ocean_simulation (#598) (@simone-silvestri)
• Respect the words "sea" and "ice" (#599) (@glwagner)
• (0.8.2) Bump version (#600) (@glwagner)

Closed issues:

• Setting a user-defined atmosphere iteration number or time on GPUs causes illegal memory crash (#566)
• ZStar to be renamed to ZStarCoordinate (#592)
• ERROR because ExponentialCoordinate (#595)

v0.8.1

ClimaOcean v0.8.1

Diff since v0.8.0

Merged pull requests:

• Increase timestep for the one-degree global simulation (#585) (@navidcy)
• Patch required for Oceananigans >=0.97.4 (#588) (@navidcy)

Closed issues:

• CondaPkg fails to install copernicusmarine (#589)

v0.8.0

ClimaOcean v0.8.0

Diff since v0.7.3

Breaking changes

• ExponentialCoordinate now is imported from Oceananigans and also it does not include a default right=0 coordinate domain boundary. Thus, what was previously written:

  Nz = 100
  z = ClimaOcean.ExponentialCoordinate(Nz, -4000)

  is now written,

  Nz = 100
  z = Oceananigans.ExponentialCoordinate(Nz, -4000, 0)

Merged pull requests:

• Drop ClimaOcean.GridUtils in favor of Oceananigans.Grids coordinate_utils since Oceananigans 0.97.2 (#583) (@navidcy)

Closed issues:

• Bug in DatasetRestoring (#556)
• Use ExponentialCoordinate and ConstantToStretchedCoordinate from Oceananigans (#582)

v0.7.3

ClimaOcean v0.7.3

Diff since v0.7.2

Merged pull requests:

• Adapt to Oceananigans v0.97.0 (#574) (@simone-silvestri)
• Improve plot in one degree simulation example (#580) (@glwagner)

v0.7.2

ClimaOcean v0.7.2

Diff since v0.7.1

Merged pull requests:

• Reinstate docs for fluxes (#578) (@simone-silvestri)
• Fix sign error on stability variable (#579) (@simone-silvestri)

Closed issues:

• Warming in one degree simulation is vertical grid dependent (#547)
• North pole imprint in sea ice (#549)
• Docs on interface fluxes were deleted (#577)